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Element type: pseudogene
Element length: 3202 nucleotides,
on anti-sense strand of
Cagl0A: complement(1608..4809).
Other names:
CAGL-IPF16553
CAGL-IPF9521
CAGL0A00121g
Element length: 3202 nucleotides,
on anti-sense strand of
Cagl0A: complement(1608..4809).
Other names:
CAGL-IPF16553
CAGL-IPF9521
CAGL0A00121g
Sequence data 
Nucleotide sequence
>CAGL0A00110g.nt ATGAACTGGAAAATATTATTGTTTTGTTGGACGTTCTTTCTGCAAGCACTGAACGCCCAA AACTTAGGTGCAATACAAAGTGAGAAATACTTTCCTAACTCTAAGGATCCAACAAGATTT CCAATAGGTTGTTCACCCCAAGTACTAAAAACACAGCCGGGTTTGGCTGTAAAGCTGTAC TCTTATGGACATCCCGTACCCGGTTGTTCATATATTACCTACCAATATCCAGATTTCCCC AGGTCAGGCTACAAAAAAGAGCGTAAACTCGCTGATATTACAGGAGTAAATGGAAAAATT GATATTGACTTGAAGCCCAACGATCCTTGTCGTGTGTTAACTGGTCATCTACCAAGCAAC TACAACTATCCAGACACATTAACCTACACAAACTTTACAATGATATTATACGGCTATTTT CAGCCAAAGGTGACCGGCTACCACACATTTAACCTTGAAGCCGACGATTTGTTATTTATG AATCTTGGTGCTGGAAATGCATTTGATTGTTGTAAAGCCGAATCAACTTTAGACAATTTT GGTAATTATCAATCATATTCGCTTTGGGGATCAGATTATGCAAAAGCTAACATTACTGTA TTTCTAGTTTCTGGTGTATATTATCCTATCAGATTGTTCTATGTGAATAGGGATAACAAT GCTGTTATAGATTTTTCTTTCACTACAGAATTTGACAAAGAGAAAGTTCATGACTTTACT AGTTACTTCTTTTCTGCTTCTGATGGAGAACAATGTCCAGGAAGTGTTAATTATAATTAT AACTGTGCTGATGTGAAATCATCAACTATTTTAACCTCTAGTACAACTGTTGATAAACAA GAAGGAAATATTGTCCCAATTACAAAAACAATTTACGAAATTGGTGTCCCATGTGATCCA GAACAGCCAACACAAAAATGTCCAGGTGAATTCTATAATCCTATTAGAGATGCATGTGAA CCTCTTCCAACGCCAAGTCAAGATATTAATTCATCTGGCTCCTCATCCTCCGACTCATTC TCACTGCCTCCACCATACACCACAACCGTTTCCAAGAGCACCACCACAGAAACAGACATC ATCTCATTCTTCCCATCCACAGACTCCAAGGGCCACACTAGAACTGGAGACATTACGATA ACATTGACCAAGCCTAGCGGTGAGGCCGACTACACCACCACCATTACTTCCGACGGTCAC ACCATCACAGAAGTAGTCTCCCACATCACCACCACTGATTCAGACGGTAACACTGTTACA TACACCACCACGATGGCCTCCTTCGATCAGGTAGGCGACGGCGTGTACACGTCTGCTCCA CCTTACTCACAGCCACCAGTTGTGACAACCACTGTGACGGAGGACGACGGTAGTAGCAAG ACGGTTGTGATCTCTTACTCGCCTTCTGAGGGCGAGGATGGGGTCACCCGTACAGGTACC ACCACTATCTCCACCATCACTCCGAGCGGCGAGCCCGACTACACCACGACGATCGACAAG GGCAACGGTGACTTCGAGACAGACCTCGTCTCCCACATCACCACCAAGGACTCCAACGGC AACCCTACCACCATCGTCACCACCATCCCATTGAAGCCAAGTGATGCCGGCGAGGCCGAC TACACCACCACCATTACTTCCGACGGTCACACCATCACAGAAGTAGTCTCCCACATCACC ACCACTGATTCAGACGGTAACACTGTTACATACACCACCACGATGGCCTCCTTCGATCAG GTAGGCGACGGCGTGTACACGTCTGCTCCACCTTACTCACAGCCACCAGTTGTGACAACC ACTGTGACGGAGGACGACGGTAGTAGCAAGACGGTTGTGATCTCTTACTCGCCTTCTGAG GGCGAGGATGGGGTCACCCGTACAGGTACCACCACTATCTCCACCATCACTCCGAGCGGC GAGGCCGACTACACCACGACGATCGACAAGGGCAACGGTGACTTCGAGACAGACCTCGTC TCCCACATCACCACCAAGGACTCCAACGGCAACCCTACCACCATCGTCACCACCATCCCA TTGAAGCCAAGTGATGCCGGCGAGGGCCGACTACACCACCACCATTACTTCCGACGGTCA CACCATCACAGAAGTAGTCTCCCACATCACCACCACTGATTCAGACGGTAACACTGTTAC ATACACCACCACGATGGCCTCCTTCGATCAGGTAGGCGACGGCGTGTACACGTCTGCTCC ACCTTACTCACAGCCACCAGTTGTGACAACCACTGTGAGTGCAGACACTGCTACTGCCAC TGTAGTAATTTCGCACTTCCCATCTATTGGCGTCGATGGAGTCACCAGGACAGGCACAAC TACTCTCTCCATGGTATCTGTTGGAGGTGAAACTGGCTACACTACATCAGTCGACAGGGG CAATGGCAGTATCGAAACTGATGTCATTTCCCATATCACCACTACCGACTCCAATGGTAA TCCTACAACAATAACCACCACAATCACCAATGCACCTGCACCTTCGATTTCTAAAGCAGA CATTGGGTCTGATTACACCACCACCGTGGTTTCTAACGGTCACACGTTCACCGAGGTTGT ATGCCATAGCACAGGTGCTGATGAGCACGGTCACACAATTGTTTCTACAGTAACGCAAAC CGTAGGTGGCCAGAGTCATGGAAACACTGTTTCAAGTGCAGCACCAGTCTCAACTGTATC CGGTGCTAGTTTTAATGCTCCTGGAACAGCAGGTGTAGGTGGTATTGTCAACTCTCAGAA ACCTCAGTCACAAAATGTGGCTGGCCAAGGGTCTGGCAACGAAAAGCCAACAGAAGCTGC TGGCACAGCCGGTGGTAGTGGCTCTGGTTCTGGCTCTGGGTCAGTTCACCAATCGGCAGG CAGTAATGTACCATCTGGATCCCCATCTGTTCAGAGTGCAAAGGGTACTGCGTCTCCAGT CAGTGGTATTCATAGTAGCCAAACACCACACTCTGTACCTTCCCAAGCCCAACAACAAGG ACAAGGACAAGCACCATCATCACGTCAACAGGCTGCCACGACTGTTCTATCACCTTCTGG TTCCTCTGTTAACAACTACGGCAGTGGATTCAACAGCACACAAACAGCATCTGTCCTACA GGGTAAGGGTGCTTCGATTAGAGTTGCTTCTCTCAGTATTATATTCTCAATGATTGCAGT AATAGTTGTCGGTATGATCTAA
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://genolevures.org/elt/CAGL/CAGL0A00110g