Chromosome view [CAGL]

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Annotated sequences: The most recent files are available on the Download page.

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detailed view of Candida glabrata Cagl0A: Cagl0A Overview:1..50000 Cagl0A: Cagl0A Overview:50001..100000 Cagl0A: Cagl0A Overview:100001..150000 Cagl0A: Cagl0A Overview:150001..200000 Cagl0A: Cagl0A Overview:200001..250000 Cagl0A: Cagl0A Overview:250001..300000 Cagl0A: Cagl0A Overview:300001..350000 Cagl0A: Cagl0A Overview:350001..400000 Cagl0A: Cagl0A Overview:400001..450000 Cagl0A: Cagl0A Overview:450001..500000 Cagl0B: Cagl0B Overview:1..50000 Cagl0B: Cagl0B Overview:50001..100000 Cagl0B: Cagl0B Overview:100001..150000 Cagl0B: Cagl0B Overview:150001..200000 Cagl0B: Cagl0B Overview:200001..250000 Cagl0B: Cagl0B Overview:250001..300000 Cagl0B: Cagl0B Overview:300001..350000 Cagl0B: Cagl0B Overview:350001..400000 Cagl0B: Cagl0B Overview:400001..450000 Cagl0B: Cagl0B Overview:450001..500000 Cagl0B: Cagl0B Overview:500001..550000 Cagl0C: Cagl0C Overview:1..50000 Cagl0C: Cagl0C Overview:50001..100000 Cagl0C: Cagl0C Overview:100001..150000 Cagl0C: Cagl0C Overview:150001..200000 Cagl0C: Cagl0C Overview:200001..250000 Cagl0C: Cagl0C Overview:250001..300000 Cagl0C: Cagl0C Overview:300001..350000 Cagl0C: Cagl0C Overview:350001..400000 Cagl0C: Cagl0C Overview:400001..450000 Cagl0C: Cagl0C Overview:450001..500000 Cagl0C: Cagl0C Overview:500001..550000 Cagl0C: Cagl0C Overview:550001..600000 Cagl0D: Cagl0D Overview:1..50000 Cagl0D: Cagl0D Overview:50001..100000 Cagl0D: Cagl0D Overview:100001..150000 Cagl0D: Cagl0D Overview:150001..200000 Cagl0D: Cagl0D Overview:200001..250000 Cagl0D: Cagl0D Overview:250001..300000 Cagl0D: Cagl0D Overview:300001..350000 Cagl0D: Cagl0D Overview:350001..400000 Cagl0D: Cagl0D Overview:400001..450000 Cagl0D: Cagl0D Overview:450001..500000 Cagl0D: Cagl0D Overview:500001..550000 Cagl0D: Cagl0D Overview:550001..600000 Cagl0D: Cagl0D Overview:600001..650000 Cagl0D: Cagl0D Overview:650001..700000 Cagl0E: Cagl0E Overview:1..50000 Cagl0E: Cagl0E Overview:50001..100000 Cagl0E: Cagl0E Overview:100001..150000 Cagl0E: Cagl0E Overview:150001..200000 Cagl0E: Cagl0E Overview:200001..250000 Cagl0E: Cagl0E Overview:250001..300000 Cagl0E: Cagl0E Overview:300001..350000 Cagl0E: Cagl0E Overview:350001..400000 Cagl0E: Cagl0E Overview:400001..450000 Cagl0E: Cagl0E Overview:450001..500000 Cagl0E: Cagl0E Overview:500001..550000 Cagl0E: Cagl0E Overview:550001..600000 Cagl0E: Cagl0E Overview:600001..650000 Cagl0E: Cagl0E Overview:650001..700000 Cagl0F: Cagl0F Overview:1..50000 Cagl0F: Cagl0F Overview:50001..100000 Cagl0F: Cagl0F Overview:100001..150000 Cagl0F: Cagl0F Overview:150001..200000 Cagl0F: Cagl0F Overview:200001..250000 Cagl0F: Cagl0F Overview:250001..300000 Cagl0F: Cagl0F Overview:300001..350000 Cagl0F: Cagl0F Overview:350001..400000 Cagl0F: Cagl0F Overview:400001..450000 Cagl0F: Cagl0F Overview:450001..500000 Cagl0F: Cagl0F Overview:500001..550000 Cagl0F: Cagl0F Overview:550001..600000 Cagl0F: Cagl0F Overview:600001..650000 Cagl0F: Cagl0F Overview:650001..700000 Cagl0F: Cagl0F Overview:700001..750000 Cagl0F: Cagl0F Overview:750001..800000 Cagl0F: Cagl0F Overview:800001..850000 Cagl0F: Cagl0F Overview:850001..900000 Cagl0F: Cagl0F Overview:900001..950000 Cagl0G: Cagl0G Overview:1..50000 Cagl0G: Cagl0G Overview:50001..100000 Cagl0G: Cagl0G Overview:100001..150000 Cagl0G: Cagl0G Overview:150001..200000 Cagl0G: Cagl0G Overview:200001..250000 Cagl0G: Cagl0G Overview:250001..300000 Cagl0G: Cagl0G Overview:300001..350000 Cagl0G: Cagl0G Overview:350001..400000 Cagl0G: Cagl0G Overview:400001..450000 Cagl0G: Cagl0G Overview:450001..500000 Cagl0G: Cagl0G Overview:500001..550000 Cagl0G: Cagl0G Overview:550001..600000 Cagl0G: Cagl0G Overview:600001..650000 Cagl0G: Cagl0G Overview:650001..700000 Cagl0G: Cagl0G Overview:700001..750000 Cagl0G: Cagl0G Overview:750001..800000 Cagl0G: Cagl0G Overview:800001..850000 Cagl0G: Cagl0G Overview:850001..900000 Cagl0G: Cagl0G Overview:900001..950000 Cagl0G: Cagl0G Overview:950001..1000000 Cagl0H: Cagl0H Overview:1..50000 Cagl0H: Cagl0H Overview:50001..100000 Cagl0H: Cagl0H Overview:100001..150000 Cagl0H: Cagl0H Overview:150001..200000 Cagl0H: Cagl0H Overview:200001..250000 Cagl0H: Cagl0H Overview:250001..300000 Cagl0H: Cagl0H Overview:300001..350000 Cagl0H: Cagl0H Overview:350001..400000 Cagl0H: Cagl0H Overview:400001..450000 Cagl0H: Cagl0H Overview:450001..500000 Cagl0H: Cagl0H Overview:500001..550000 Cagl0H: Cagl0H Overview:550001..600000 Cagl0H: Cagl0H Overview:600001..650000 Cagl0H: Cagl0H Overview:650001..700000 Cagl0H: Cagl0H Overview:700001..750000 Cagl0H: Cagl0H Overview:750001..800000 Cagl0H: Cagl0H Overview:800001..850000 Cagl0H: Cagl0H Overview:850001..900000 Cagl0H: Cagl0H Overview:900001..950000 Cagl0H: Cagl0H Overview:950001..1000000 Cagl0H: Cagl0H Overview:1000001..1050000 Cagl0H: Cagl0H Overview:1050001..1100000 Cagl0I: Cagl0I Overview:1..50000 Cagl0I: Cagl0I Overview:50001..100000 Cagl0I: Cagl0I Overview:100001..150000 Cagl0I: Cagl0I Overview:150001..200000 Cagl0I: Cagl0I Overview:200001..250000 Cagl0I: Cagl0I Overview:250001..300000 Cagl0I: Cagl0I Overview:300001..350000 Cagl0I: Cagl0I Overview:350001..400000 Cagl0I: Cagl0I Overview:400001..450000 Cagl0I: Cagl0I Overview:450001..500000 Cagl0I: Cagl0I Overview:500001..550000 Cagl0I: Cagl0I Overview:550001..600000 Cagl0I: Cagl0I Overview:600001..650000 Cagl0I: Cagl0I Overview:650001..700000 Cagl0I: Cagl0I Overview:700001..750000 Cagl0I: Cagl0I Overview:750001..800000 Cagl0I: Cagl0I Overview:800001..850000 Cagl0I: Cagl0I Overview:850001..900000 Cagl0I: Cagl0I Overview:900001..950000 Cagl0I: Cagl0I Overview:950001..1000000 Cagl0I: Cagl0I Overview:1000001..1050000 Cagl0I: Cagl0I Overview:1050001..1100000 Cagl0I: Cagl0I Overview:1100001..1150000 Cagl0J: Cagl0J Overview:1..50000 Cagl0J: Cagl0J Overview:50001..100000 Cagl0J: Cagl0J Overview:100001..150000 Cagl0J: Cagl0J Overview:150001..200000 Cagl0J: Cagl0J Overview:200001..250000 Cagl0J: Cagl0J Overview:250001..300000 Cagl0J: Cagl0J Overview:300001..350000 Cagl0J: Cagl0J Overview:350001..400000 Cagl0J: Cagl0J Overview:400001..450000 Cagl0J: Cagl0J Overview:450001..500000 Cagl0J: Cagl0J Overview:500001..550000 Cagl0J: Cagl0J Overview:550001..600000 Cagl0J: Cagl0J Overview:600001..650000 Cagl0J: Cagl0J Overview:650001..700000 Cagl0J: Cagl0J Overview:700001..750000 Cagl0J: Cagl0J Overview:750001..800000 Cagl0J: Cagl0J Overview:800001..850000 Cagl0J: Cagl0J Overview:850001..900000 Cagl0J: Cagl0J Overview:900001..950000 Cagl0J: Cagl0J Overview:950001..1000000 Cagl0J: Cagl0J Overview:1000001..1050000 Cagl0J: Cagl0J Overview:1050001..1100000 Cagl0J: Cagl0J Overview:1100001..1150000 Cagl0J: Cagl0J Overview:1150001..1200000 Cagl0K: Cagl0K Overview:1..50000 Cagl0K: Cagl0K Overview:50001..100000 Cagl0K: Cagl0K Overview:100001..150000 Cagl0K: Cagl0K Overview:150001..200000 Cagl0K: Cagl0K Overview:200001..250000 Cagl0K: Cagl0K Overview:250001..300000 Cagl0K: Cagl0K Overview:300001..350000 Cagl0K: Cagl0K Overview:350001..400000 Cagl0K: Cagl0K Overview:400001..450000 Cagl0K: Cagl0K Overview:450001..500000 Cagl0K: Cagl0K Overview:500001..550000 Cagl0K: Cagl0K Overview:550001..600000 Cagl0K: Cagl0K Overview:600001..650000 Cagl0K: Cagl0K Overview:650001..700000 Cagl0K: Cagl0K Overview:700001..750000 Cagl0K: Cagl0K Overview:750001..800000 Cagl0K: Cagl0K Overview:800001..850000 Cagl0K: Cagl0K Overview:850001..900000 Cagl0K: Cagl0K Overview:900001..950000 Cagl0K: Cagl0K Overview:950001..1000000 Cagl0K: Cagl0K Overview:1000001..1050000 Cagl0K: Cagl0K Overview:1050001..1100000 Cagl0K: Cagl0K Overview:1100001..1150000 Cagl0K: Cagl0K Overview:1150001..1200000 Cagl0K: Cagl0K Overview:1200001..1250000 Cagl0K: Cagl0K Overview:1250001..1300000 Cagl0K: Cagl0K Overview:1300001..1350000 Cagl0L: Cagl0L Overview:1..50000 Cagl0L: Cagl0L Overview:50001..100000 Cagl0L: Cagl0L Overview:100001..150000 Cagl0L: Cagl0L Overview:150001..200000 Cagl0L: Cagl0L Overview:200001..250000 Cagl0L: Cagl0L Overview:250001..300000 Cagl0L: Cagl0L Overview:300001..350000 Cagl0L: Cagl0L Overview:350001..400000 Cagl0L: Cagl0L Overview:400001..450000 Cagl0L: Cagl0L Overview:450001..500000 Cagl0L: Cagl0L Overview:500001..550000 Cagl0L: Cagl0L Overview:550001..600000 Cagl0L: Cagl0L Overview:600001..650000 Cagl0L: Cagl0L Overview:650001..700000 Cagl0L: Cagl0L Overview:700001..750000 Cagl0L: Cagl0L Overview:750001..800000 Cagl0L: Cagl0L Overview:800001..850000 Cagl0L: Cagl0L Overview:850001..900000 Cagl0L: Cagl0L Overview:900001..950000 Cagl0L: Cagl0L Overview:950001..1000000 Cagl0L: Cagl0L Overview:1000001..1050000 Cagl0L: Cagl0L Overview:1050001..1100000 Cagl0L: Cagl0L Overview:1100001..1150000 Cagl0L: Cagl0L Overview:1150001..1200000 Cagl0L: Cagl0L Overview:1200001..1250000 Cagl0L: Cagl0L Overview:1250001..1300000 Cagl0L: Cagl0L Overview:1300001..1350000 Cagl0L: Cagl0L Overview:1350001..1400000 Cagl0L: Cagl0L Overview:1400001..1450000 Cagl0L: Cagl0L Overview:1450001..1500000 Cagl0M: Cagl0M Overview:1..50000 Cagl0M: Cagl0M Overview:50001..100000 Cagl0M: Cagl0M Overview:100001..150000 Cagl0M: Cagl0M Overview:150001..200000 Cagl0M: Cagl0M Overview:200001..250000 Cagl0M: Cagl0M Overview:250001..300000 Cagl0M: Cagl0M Overview:300001..350000 Cagl0M: Cagl0M Overview:350001..400000 Cagl0M: Cagl0M Overview:400001..450000 Cagl0M: Cagl0M Overview:450001..500000 Cagl0M: Cagl0M Overview:500001..550000 Cagl0M: Cagl0M Overview:550001..600000 Cagl0M: Cagl0M Overview:600001..650000 Cagl0M: Cagl0M Overview:650001..700000 Cagl0M: Cagl0M Overview:700001..750000 Cagl0M: Cagl0M Overview:750001..800000 Cagl0M: Cagl0M Overview:800001..850000 Cagl0M: Cagl0M Overview:850001..900000 Cagl0M: Cagl0M Overview:900001..950000 Cagl0M: Cagl0M Overview:950001..1000000 Cagl0M: Cagl0M Overview:1000001..1050000 Cagl0M: Cagl0M Overview:1050001..1100000 Cagl0M: Cagl0M Overview:1100001..1150000 Cagl0M: Cagl0M Overview:1150001..1200000 Cagl0M: Cagl0M Overview:1200001..1250000 Cagl0M: Cagl0M Overview:1250001..1300000 Cagl0M: Cagl0M Overview:1300001..1350000 Cagl0M: Cagl0M Overview:1350001..1400000 Cagl0M: Cagl0M Overview:1400001..1450000

General information, lifestyle, ecological niche  

Candida glabrata (Torulopsis glabrata) is currently the second most frequent organism isolated from superficial and invasive fungal infections, after Candida albicans, and contrary to the latter, exhibits resistance to azole derivatives [1]. It is phylogenetically closer to Saccharomyces than to other Candida, despite its name. It is usually isolated from sites of infections or mammalian feces, but there is some evidence that it exists in other habitats [2]. It is a haploid yeast that can exhibit pseudohyphal growth [3]. Even though the genes homologous to mating and mating-type switching from S. cerevisiae are all found in the genome of C. glabrata [4, 5] and mating type switching has been reported [6, 7], no mating has ever been described and no diploid cells have been isolated.

Molecular genetic methods applied to this yeast include replicative and integrative transformation [8,9, 10], but the lack of a sexual cycle is a draw-back for classical genetics. A particular family of adhesins involved in pathogenicity, the subtelomeric EPA family, has been identified in this yeast [11].

Highlights of genetic and genomic results  

The genome of strain CBS138 (type strain isolated from human feces) has been sequenced and reveals the presence of 13 chromosomes totalling 12.3Mb without the rDNA, which is organised into two distinct loci, on chromosomes 12 and 13. There are approx 5283 coding genes, and 207 tRNA genes. The strain contains two MAT-like loci with MATalpha information, and a third with MATa information. EPA genes in this strain are also part of a large subtelomeric family.

Compared to S. cerevisiae, with which it shares the common whole genome duplication in its ancestry, C. glabrata shows a significantly greater degree of gene loss, resulting in a regressive evolution (loss of specific functions).

References  

  1. Kaur R, Castano I, Cormack BP. 2004. Functional genomic analysis of fluconazole susceptibility in the pathogenic yeast Candida glabrata: roles of calcium signaling and mitochondria. Antimicrob Agents Chemother; 48(5):1600-13.
  2. Kurtzman CP, Fell JW. 1997. In "The yeasts, a taxonomic study", Elsevier, Amsterdam.
  3. Csank C, Haynes K. 2000. Candida glabrata displays pseudohyphal growth. FEMS Microbiol Lett;189(1):115-20.
  4. Srikantha T, Lachke SA, Soll DR. 2003. Three mating type-like loci in Candida glabrata. Eukaryot Cell; 2(2):328-40.
  5. Wong S, Fares MA, Zimmermann W, Butler G, Wolfe KH.2003. Evidence from comparative genomics for a complete sexual cycle in the 'asexual' pathogenic yeast Candida glabrata. Genome Biol; 4(2):R10.
  6. Brockert PJ, Lachke SA, Srikantha T, Pujol C, Galask R, Soll DR. 2003. Phenotypic switching and mating type switching of Candida glabrata at sites of colonization. Infect Immun;71(12):7109-18.
  7. Butler G, Kenny C, Fagan A, Kurischko C, Gaillardin C, Wolfe KH. 2004. Evolution of the MAT locus and its Ho endonuclease in yeast species. Proc Natl Acad Sci U S A;101(6):1632-7. Epub 2004 Jan 26.
  8. Zhou P, Szczypka MS, Young R, Thiele DJ. 1994. A system for gene cloning and manipulation in the yeast Candida glabrata. Gene;142(1):135-40.
  9. Kitada K, Yamaguchi E, Arisawa M. 1995. Cloning of the Candida glabrata TRP1 and HIS3 genes, and construction of their disruptant strains by sequential integrative transformation. Gene; 165(2):203-6.
  10. Castano I, Kaur R, Pan S, Cregg R, Penas Ade L, Guo N, Biery MC, Craig NL, Cormack BP. 2003. Tn7-based genome-wide random insertional mutagenesis of Candida glabrata. Genome Res; 13(5):905-15.
  11. Cormack BP, Ghori N, Falkow S. 1999. An adhesin of the yeast pathogen Candida glabrata mediating adherence to human epithelial cells. Science; 285(5427):578-82.